Expression of Bacterial Genome under Soil Environment

Fluctuations of soil bacterial communities under potato cropping

It is important to understand the underlying factors that lead to shifts in soil microbial communities, not simply for the characterization of these complex biotic systems, but also to understand the impact that changes in microbial community composition may have on terrestrial ecosystems. In this study, the impact of genetically different potato (Solanum tuberosum) plants growing in arable soi...

The under-recognized dominance of Verrucomicrobia in soil bacterial communities.

Verrucomicrobia are ubiquitous in soil, but members of this bacterial phylum are thought to be present at low frequency in soil, with few studies focusing specifically on verrucomicrobial abundance, diversity, and distribution. Here we used barcoded pyrosequencing to analyze verrucomicrobial communities in surface soils collected across a range of biomes in Antarctica, Europe, and the Americas ...

Genome reduction in an abundant and ubiquitous soil bacterial lineage

Reductive Evolution of Bacterial Genome in Insect Gut Environment

Obligate endocellular symbiotic bacteria of insects and other organisms generally exhibit drastic genome reduction. Recently, it was shown that symbiotic gut bacteria of some stinkbugs also have remarkably reduced genomes. Here, we report the complete genome sequence of such a gut bacterium Ishikawaella capsulata of the plataspid stinkbug Megacopta punctatissima. Gene repertoire and evolutionar...

Distinct Soil Bacterial Communities Revealed under a Diversely Managed Agroecosystem

Land-use change and management practices are normally enacted to manipulate environments to improve conditions that relate to production, remediation, and accommodation. However, their effect on the soil microbial community and their subsequent influence on soil function is still difficult to quantify. Recent applications of molecular techniques to soil biology, especially the use of 16S rRNA, ...